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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_202169967_202170191_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
202169967 - 202170191
Intron Length:
225

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGCCC
5'SS Class:
strong_major
3'SS Sequence:
ATTCTTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTGAT
U12 Branch Point Sequence:
ACACTGATAACT
Flanking Amino Acid:
IGLGFKTPKEAIEGTYIDKK
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
71.3
37.2
Major BPS
74.7
0.61
0.9
63.4
35.6
Major PPT
89.4
0.89
0.7
84.7
29.3
Minor 5ss
32
-2.1
3.3
42.6
44.4
Minor BPS
44.2
-0.3
2.2
61.27
42.2

Associated Gene:

Gene:
RPS11
Ensembl Gene ID:
ENSAPLG00000010997
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026347
202169538 - 202221102
51565
ENSAPLT00000019886
202169538 - 202220893
51356
ENSAPLT00000011443
202169538 - 202171392
1855