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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_202170268_202171885_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
202170268 - 202171885
Intron Length:
1618

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTCGT
5'SS Class:
strong_major
3'SS Sequence:
GGTGTCTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAC
U12 Branch Point Sequence:
ACCCCCTGCAAT
Flanking Amino Acid:
NVSIRGRILSGMSRSGTSSP
Intron Amino Acid Position:
75

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
77.8
38.7
Major BPS
73.5
0.58
0.9
75.4
28.3
Major PPT
76.6
0.6
1
69.4
41.7
Minor 5ss
30.5
-2.2
2.9
41.4
45
Minor BPS
44.2
-0.3
2
57.98
44.4

Associated Gene:

Gene:
RPS11
Ensembl Gene ID:
ENSAPLG00000010997
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026347
202169538 - 202221102
51565