Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_202171079_202171885_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

202171079 - 202171885

Intron Length:

807

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGTGTGCA

5'SS Class:

strong_major

3'SS Sequence:

GGTGTCTTTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AATTCAC

U12 Branch Point Sequence:

ACCCCCTGCAAT

Flanking Amino Acid:

NMSVHLSPCFRDVQIGDIVT

Intron Amino Acid Position:

118

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.2

0.78

0.9

72.9

31.4

Major BPS

73.5

0.58

0.9

75.4

28.3

Major PPT

76.6

0.6

69.4

41.7

Minor 5ss

33.6

-1.9

41.1

45.4

Minor BPS

44.2

-0.3

57.98

44.4

Associated Gene:

Gene:

RPS11

Ensembl Gene ID:

ENSAPLG00000010997

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019886

202169538 - 202220893

51356