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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_202205743_202205868_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
202205743 - 202205868
Intron Length:
126

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCCCA
5'SS Class:
strong_major
3'SS Sequence:
CTGCTCTCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGTCCAT
U12 Branch Point Sequence:
GGGTCCATGGCC
Flanking Amino Acid:
ATSLHEVCSQIMVERRSARA
Intron Amino Acid Position:
744

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.79
0.9
67.6
39.4
Major BPS
47.8
-0.1
1.5
58.2
48.3
Major PPT
73.7
0.53
0.8
65.3
36.2
Minor 5ss
32.7
-2
3
39.6
45.9
Minor BPS
38.9
-0.8
3.5
56.35
42.1

Associated Gene:

Gene:
APBB1
Ensembl Gene ID:
ENSAPLG00000021238
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027721
202204127 - 202211055
6929