About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_202207184_202207290_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
202207184 - 202207290
Intron Length:
107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGGGTT
5'SS Class:
major
3'SS Sequence:
CCCGCTCTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGGTGAC
U12 Branch Point Sequence:
CAGCCGGTGACA
Flanking Amino Acid:
PAPDPASPGISAALAEEDEP
Intron Amino Acid Position:
604

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
73
38.2
Major BPS
47.5
-0.1
1.3
38.2
41.7
Major PPT
75
0.56
0.8
68.1
32
Minor 5ss
28.3
-2.5
3.9
45.4
49.7
Minor BPS
39.8
-0.8
2.5
48.15
42.5

Associated Gene:

Gene:
APBB1
Ensembl Gene ID:
ENSAPLG00000021238
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027721
202204127 - 202211055
6929