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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_202207502_202207572_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
202207502 - 202207572
Intron Length:
71

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTCGG
5'SS Class:
major
3'SS Sequence:
GCTCTGCCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAG
U12 Branch Point Sequence:
TTGTCCTGAGCC
Flanking Amino Acid:
QGSTPCEEQPLAWTGFAPAE
Intron Amino Acid Position:
557

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
60
46.2
Major BPS
54.8
0.12
1.6
53.3
44.2
Major PPT
68.5
0.42
0.9
60.8
35.3
Minor 5ss
28.7
-2.4
2.8
33.1
41.8
Minor BPS
64.3
0.43
1.7
75.56
40.7

Associated Gene:

Gene:
APBB1
Ensembl Gene ID:
ENSAPLG00000021238
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027721
202204127 - 202211055
6929