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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_202207752_202209062_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
202207752 - 202209062
Intron Length:
1311

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGCCCC
5'SS Class:
major
3'SS Sequence:
CCCTGCTCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCCCAG
U12 Branch Point Sequence:
GGGGTCCCAGCC
Flanking Amino Acid:
SPAGSSPDDADSFWTRNSFE
Intron Amino Acid Position:
497

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1.1
56.7
42.7
Major BPS
42.3
-0.4
1.7
52.1
45.2
Major PPT
70
0.45
0.8
60.7
35.3
Minor 5ss
32.3
-2
3.2
42.1
44.9
Minor BPS
37.1
-1
1.9
40.54
38.8

Associated Gene:

Gene:
APBB1
Ensembl Gene ID:
ENSAPLG00000021238
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027721
202204127 - 202211055
6929