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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_202216587_202216844_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
202216587 - 202216844
Intron Length:
258

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCACGGCTG
5'SS Class:
strong_major
3'SS Sequence:
GGGCACGTTGCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CATGGAT
U12 Branch Point Sequence:
TGGGTCTCAGGC
Flanking Amino Acid:
EEHQNLYLFQGEQVWAYAGG
Intron Amino Acid Position:
267

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.85
1
68.8
42
Major BPS
51.3
0.03
1.4
52.7
43.2
Major PPT
59.6
0.22
1.1
50.2
43.5
Minor 5ss
23
-3.1
4.2
37.7
47.1
Minor BPS
40.5
-0.7
2
46.45
42.8

Associated Gene:

Gene:
HPX
Ensembl Gene ID:
ENSAPLG00000028385
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038762
202213417 - 202218079
4663
ENSAPLT00000025947
202213417 - 202218009
4593
ENSAPLT00000022894
202213417 - 202218079
4663