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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_202217518_202217701_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
202217518 - 202217701
Intron Length:
184

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGAGCC
5'SS Class:
major
3'SS Sequence:
CCACCACCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCCAAC
U12 Branch Point Sequence:
TTCCCCCCACCA
Flanking Amino Acid:
HGAEPLGNDTDLSQLCGDKG
Intron Amino Acid Position:
46

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
0.9
64.8
33.2
Major BPS
48.7
-0
1.3
56.4
38.8
Major PPT
61.3
0.26
0.9
50.7
32.7
Minor 5ss
26.4
-2.7
3.2
31
36.4
Minor BPS
45.5
-0.3
2.1
61.96
43.8

Associated Gene:

Gene:
HPX
Ensembl Gene ID:
ENSAPLG00000028385
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025947
202213417 - 202218009
4593