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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_202217773_202217944_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
202217773 - 202217944
Intron Length:
172

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTGAGTGGG
5'SS Class:
major
3'SS Sequence:
TGCCTGTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GACCCAC
U12 Branch Point Sequence:
GTCCCCAGGACC
Flanking Amino Acid:
AALALGCARPLTHLKPDAPG
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.7
0.42
1.1
56.5
42.7
Major BPS
44.8
-0.3
1.3
50.1
36.7
Major PPT
70.1
0.45
0.9
61
40.2
Minor 5ss
29.6
-2.3
3.2
41
45.3
Minor BPS
47.1
-0.2
1.8
58.37
40

Associated Gene:

Gene:
HPX
Ensembl Gene ID:
ENSAPLG00000028385
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025947
202213417 - 202218009
4593