Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_202261992_202262482_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

202261992 - 202262482

Intron Length:

491

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAACGCTG

5'SS Class:

major

3'SS Sequence:

CTTCCCCTTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTAAC

U12 Branch Point Sequence:

CCTGCTTTAACT

Flanking Amino Acid:

GGLLRHVRPKMKRKSENGLD

Intron Amino Acid Position:

133

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.9

0.59

1.2

64.3

47.1

Major BPS

77.3

0.68

79.3

29.4

Major PPT

83.1

0.74

0.7

76.9

Minor 5ss

39.9

-1.1

3.4

55.8

48.4

Minor BPS

70.9

0.73

1.4

78.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000009463

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009880

202256377 - 202265897

9521

ENSAPLT00000024890

202256377 - 202263013

6637