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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_202290628_202290666_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
202290628 - 202290666
Intron Length:
39

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGAACCA
5'SS Class:
weak_major
3'SS Sequence:
GCCTCCCCTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGTTGAA
U12 Branch Point Sequence:
CCTCCCCTACAG
Flanking Amino Acid:
RPGLHHTMHPATQPSAGVQV
Intron Amino Acid Position:
117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57.7
0.18
1.2
50.7
40.2
Major BPS
54.3
0.11
1.3
49.1
46.3
Major PPT
72.9
0.52
0.8
64.9
30.9
Minor 5ss
26.6
-2.7
3.1
32
42
Minor BPS
42.7
-0.6
2
46.58
45.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029753
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018367
202290509 - 202294122
3614