About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_202290690_202293760_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
202290690 - 202293760
Intron Length:
3071

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TGG|GCCCGTGGA
5'SS Class:
major
3'SS Sequence:
CCCAGCAGGTGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTAGCAG
U12 Branch Point Sequence:
CTTCCCTTAGCA
Flanking Amino Acid:
PRRPSSGFRPGLHHTMHPAT
Intron Amino Acid Position:
109

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.5
0.39
1.3
60
41.3
Major BPS
45.8
-0.2
1.8
59.7
46.7
Major PPT
41
-0.5
1.7
38.5
38.7
Minor 5ss
15.6
-4
3.5
14.6
28.3
Minor BPS
68.9
0.59
1.6
77.03
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029753
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018367
202290509 - 202294122
3614