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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_202295986_202313131_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
202295986 - 202313131
Intron Length:
17146

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAAAAGT
5'SS Class:
major
3'SS Sequence:
GAAGCCATCCCAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTTTGAA
U12 Branch Point Sequence:
AGCCCTTGGACT
Flanking Amino Acid:
WGWLGKIPRAVYNLTVAASD
Intron Amino Acid Position:
344

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68
0.42
1.3
68.8
42.1
Major BPS
74.8
0.62
1
67
39.8
Major PPT
55.8
0.13
1
44
41.7
Minor 5ss
30
-2.3
3
41.4
44.6
Minor BPS
50.3
0.09
1.5
64.4
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024979
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044799
202291947 - 202316126
24180