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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_202314129_202316093_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
202314129 - 202316093
Intron Length:
1965

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTACAGCTG
5'SS Class:
weak_major
3'SS Sequence:
TGGATCTGGGCAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TTTCCATTGACT
Flanking Amino Acid:
LPALAHRACRLRTSLPLDHE
Intron Amino Acid Position:
12

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.7
0.23
1.2
48.7
47.2
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
58.2
0.19
1.2
54.1
45.7
Minor 5ss
32.2
-2
3.6
37.9
47
Minor BPS
72.6
0.79
1.6
90.63
32.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024979
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044799
202291947 - 202316126
24180