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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_202368701_202369122_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
202368701 - 202369122
Intron Length:
422

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGGAGC
5'SS Class:
major
3'SS Sequence:
TTTCATTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
AATAATTGAATT
Flanking Amino Acid:
RRRRRAPLVHRGYYIRARAV
Intron Amino Acid Position:
361

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
64.2
41.9
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
84.7
0.78
0.8
79.7
32
Minor 5ss
27.6
-2.6
3
34.8
41.4
Minor BPS
49.4
0.04
1.6
66.59
37.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010069
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010495
202367619 - 202392792
25174