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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_202369205_202369539_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
202369205 - 202369539
Intron Length:
335

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGTTT
5'SS Class:
major
3'SS Sequence:
ACTTTATCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
GATACTTTATCT
Flanking Amino Acid:
LKTQSYPRTQILSLGAGLDS
Intron Amino Acid Position:
389

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.1
73
38.7
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
80.5
0.69
0.8
74.3
34.8
Minor 5ss
40.9
-1
3.7
64.2
47.3
Minor BPS
60.6
0.41
1.6
74.88
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010069
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010495
202367619 - 202392792
25174