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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_202369721_202372443_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
202369721 - 202372443
Intron Length:
2723

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGATAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTCCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TTTGTATCATTT
Flanking Amino Acid:
LVGDTEGERLGVTTAFSGED
Intron Amino Acid Position:
449

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
73.8
30.9
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
82.4
0.73
0.8
76.9
32
Minor 5ss
44.3
-0.6
2.8
58.5
46.3
Minor BPS
45.2
-0.2
2
68.63
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010069
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010495
202367619 - 202392792
25174