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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_202374529_202376274_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
202374529 - 202376274
Intron Length:
1746

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATCCTC
5'SS Class:
major
3'SS Sequence:
TGGCTTTCTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAG
U12 Branch Point Sequence:
TGGCTTTCTACA
Flanking Amino Acid:
QSLEPFDEYEEWHLKCSHYF
Intron Amino Acid Position:
602

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
69
42.1
Major BPS
72.4
0.56
1.5
71.4
45.1
Major PPT
78.7
0.65
0.9
72.5
37.8
Minor 5ss
42.5
-0.8
3.1
59.7
44.9
Minor BPS
44.6
-0.4
1.8
52.98
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010069
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010495
202367619 - 202392792
25174