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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_202376366_202378652_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
202376366 - 202378652
Intron Length:
2287

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACATACT
5'SS Class:
major
3'SS Sequence:
TCATTGCCTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TGAAATTTAACA
Flanking Amino Acid:
SWTPLLSSMTVPHHHGPVRI
Intron Amino Acid Position:
632

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
77.9
36.5
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
77.3
0.61
0.9
73.8
36.7
Minor 5ss
36.7
-1.5
3.1
52.4
44.2
Minor BPS
59.7
0.3
1.5
67.16
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010069
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010495
202367619 - 202392792
25174