About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_202378911_202379090_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
202378911 - 202379090
Intron Length:
180

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TATGTCTCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTTAT
U12 Branch Point Sequence:
TCAGTGTGAACT
Flanking Amino Acid:
VKKENHDKRWDERLYHTVSC
Intron Amino Acid Position:
718

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
81.3
32.8
Major BPS
73.7
0.59
1.2
65.7
43.2
Major PPT
80.2
0.68
0.9
73.3
36.9
Minor 5ss
34.4
-1.8
2.8
37.5
40.1
Minor BPS
46.1
-0.2
2.2
64.75
45.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010069
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010495
202367619 - 202392792
25174