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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_20262354_20264215_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20262354 - 20264215
Intron Length:
1862

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGTAT
5'SS Class:
major
3'SS Sequence:
TGGTTTCTCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TGTCTTTTAACT
Flanking Amino Acid:
VIVHVTSSLKDTPHPAKEML
Intron Amino Acid Position:
560

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.1
69.1
38
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
75.1
0.56
0.9
73.8
36.9
Minor 5ss
36.7
-1.5
3.6
55.1
49.1
Minor BPS
75.5
0.88
1.1
85.79
33.8

Associated Gene:

Gene:
PANX2
Ensembl Gene ID:
ENSAPLG00000002700
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002723
20242738 - 20264577
21840