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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_20321048_20323618_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
20321048 - 20323618
Intron Length:
2571

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTATGTTTC
5'SS Class:
weak_major
3'SS Sequence:
TTGCCCTTTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTCAT
U12 Branch Point Sequence:
TTTTTCTTGCCC
Flanking Amino Acid:
KETSSVSQNISDAEAFKILL
Intron Amino Acid Position:
35

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.4
0.43
1.1
68.2
37.6
Major BPS
77
0.67
1.1
77.7
37.1
Major PPT
77.5
0.62
0.8
69.8
36.6
Minor 5ss
63.2
0.45
2.2
79.6
33.9
Minor BPS
49.8
-0
3.5
81.07
33.8

Associated Gene:

Gene:
TRABD
Ensembl Gene ID:
ENSAPLG00000002798
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002846
20318746 - 20337489
18744