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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_20323786_20324682_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20323786 - 20324682
Intron Length:
897

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTAGG
5'SS Class:
strong_major
3'SS Sequence:
TCATCTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATCAT
U12 Branch Point Sequence:
CTTTCCTAAATT
Flanking Amino Acid:
SDSSKKDVVKTIQEVQPDVV
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
1
72.7
44.5
Major BPS
71.6
0.54
1
72
33.1
Major PPT
86.1
0.81
0.8
84.3
30.3
Minor 5ss
33.7
-1.9
3
42
44.7
Minor BPS
73.6
0.82
1.6
87.41
38.9

Associated Gene:

Gene:
TRABD
Ensembl Gene ID:
ENSAPLG00000002798
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002846
20318746 - 20337489
18744