About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_20324824_20329794_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20324824 - 20329794
Intron Length:
4971

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGGTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTTTTTTTTCCA
Flanking Amino Acid:
LEKLQQAIKQNGVMSGLMQM
Intron Amino Acid Position:
138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
73
36.4
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
98.2
1.08
0.5
92.3
26.6
Minor 5ss
39.9
-1.1
3.6
57.8
47.2
Minor BPS
44.4
-0.4
3.6
74.12
37.8

Associated Gene:

Gene:
TRABD
Ensembl Gene ID:
ENSAPLG00000002798
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002846
20318746 - 20337489
18744