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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_20329906_20330764_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20329906 - 20330764
Intron Length:
859

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGTGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TACAGCTTGACT
Flanking Amino Acid:
GGEFREAFKEASKVPFCKFH
Intron Amino Acid Position:
175

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
0.9
78.5
30
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
88.5
0.87
0.7
80.8
31.2
Minor 5ss
35.8
-1.6
3
48
47.7
Minor BPS
56.6
0.29
1.9
72.83
44

Associated Gene:

Gene:
TRABD
Ensembl Gene ID:
ENSAPLG00000002798
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002846
20318746 - 20337489
18744