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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_20330905_20333116_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20330905 - 20333116
Intron Length:
2212

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAATA
5'SS Class:
strong_major
3'SS Sequence:
ACCTCTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATTAC
U12 Branch Point Sequence:
GAAAAATTACCT
Flanking Amino Acid:
WGLCFLSDPISKDDVEKCKQ
Intron Amino Acid Position:
221

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
82.5
29.7
Major BPS
58.2
0.21
1
49.8
34.7
Major PPT
80.2
0.68
0.8
76.9
31
Minor 5ss
43.1
-0.8
2.9
57.4
46.9
Minor BPS
43.6
-0.4
2
58.59
43.1

Associated Gene:

Gene:
TRABD
Ensembl Gene ID:
ENSAPLG00000002798
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002846
20318746 - 20337489
18744