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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_20334888_20337129_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20334888 - 20337129
Intron Length:
2242

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTCGT
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTGCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGTTTTTTATCT
Flanking Amino Acid:
NSDLNIQEIMSVPPPSASSK
Intron Amino Acid Position:
316

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
74.4
41.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
79
0.65
0.9
73
37.4
Minor 5ss
42
-0.9
2.9
59.1
45.4
Minor BPS
68.6
0.66
1.5
83.95
37.1

Associated Gene:

Gene:
TRABD
Ensembl Gene ID:
ENSAPLG00000002798
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002846
20318746 - 20337489
18744