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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_20352710_20356035_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20352710 - 20356035
Intron Length:
3326

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TTGTGTTGAAAA
Flanking Amino Acid:
IQRNAAFFKEITKRTARLVA
Intron Amino Acid Position:
414

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.7
33.7
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
93.1
0.97
0.5
93.2
15.7
Minor 5ss
32.8
-2
2.9
39.4
46.1
Minor BPS
49.3
-0
2
65.19
41.3

Associated Gene:

Gene:
SELENOO
Ensembl Gene ID:
ENSAPLG00000003085
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003155
20349617 - 20362014
12398