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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_20356167_20356512_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20356167 - 20356512
Intron Length:
346

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TCTTCGTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATAACAA
U12 Branch Point Sequence:
GGAATGCTAACT
Flanking Amino Acid:
IDYGPFGFMDRYDPDHICNG
Intron Amino Acid Position:
457

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1.2
76.2
39.9
Major BPS
53
0.08
1
61.4
34.3
Major PPT
81.5
0.71
0.8
76.7
31.9
Minor 5ss
31.7
-2.1
3.1
40.6
45.6
Minor BPS
43
-0.4
2.3
59.88
42.8

Associated Gene:

Gene:
SELENOO
Ensembl Gene ID:
ENSAPLG00000003085
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003155
20349617 - 20362014
12398