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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_20357293_20358846_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20357293 - 20358846
Intron Length:
1554

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATACTG
5'SS Class:
major
3'SS Sequence:
CTCTTGTTCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TCAACTTTAATG
Flanking Amino Acid:
KVAFKPQMDPRQLSMMLMLA
Intron Amino Acid Position:
601

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
68.3
42.6
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
79.6
0.67
0.8
71.8
38.1
Minor 5ss
35.6
-1.6
3.2
48
47.5
Minor BPS
62.9
0.27
1.4
60.55
41.9

Associated Gene:

Gene:
SELENOO
Ensembl Gene ID:
ENSAPLG00000003085
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003155
20349617 - 20362014
12398