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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_20359033_20360126_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20359033 - 20360126
Intron Length:
1094

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGGTTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTAATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
ACTTGTTTAATT
Flanking Amino Acid:
KHWTEWLEKYKVRLQKEIEG
Intron Amino Acid Position:
663

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
82.3
31.4
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
82.1
0.72
0.9
78.9
38.5
Minor 5ss
44.4
-0.6
3.4
64.7
41
Minor BPS
64.1
0.52
1.7
77.48
40

Associated Gene:

Gene:
SELENOO
Ensembl Gene ID:
ENSAPLG00000003085
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003155
20349617 - 20362014
12398