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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_20360284_20360916_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20360284 - 20360916
Intron Length:
633

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGATTA
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTTCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
ATTCTCTTAACC
Flanking Amino Acid:
EAAENGDFSEVRNVLKLLEN
Intron Amino Acid Position:
716

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.3
1.02
0.7
86.9
22.8
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
81.4
0.71
0.8
74.1
36.7
Minor 5ss
41.5
-0.9
3.1
56
48.2
Minor BPS
79
0.89
1.1
82.18
30.7

Associated Gene:

Gene:
SELENOO
Ensembl Gene ID:
ENSAPLG00000003085
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003155
20349617 - 20362014
12398