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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_20381618_20383317_R

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20381618 - 20383317
Intron Length:
1700

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATTTGAAACT
Flanking Amino Acid:
FKYYSHFLFKVVTKLVNRGY
Intron Amino Acid Position:
1716

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.8
84.2
26.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
91.9
0.94
0.6
84.9
30
Minor 5ss
33.8
-1.8
2.9
42.8
44.4
Minor BPS
49.1
0.01
2.2
75.56
41.8

Associated Gene:

Gene:
TUBGCP6
Ensembl Gene ID:
ENSAPLG00000003180
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003259
20381526 - 20403454
21929