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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_20383518_20384154_R

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20383518 - 20384154
Intron Length:
637

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAAGCGAG
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTCGTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAC
U12 Branch Point Sequence:
CTACATTTAACA
Flanking Amino Acid:
HAEYLNKAIFRGLLTEKAAP
Intron Amino Acid Position:
1649

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.8
0.99
0.9
71.2
43.8
Major BPS
80.9
0.77
0.8
81.7
25.4
Major PPT
76.4
0.6
0.9
77.9
36.6
Minor 5ss
25.4
-2.8
4.1
36.8
47.7
Minor BPS
59.8
0.3
1.5
66.7
39.4

Associated Gene:

Gene:
TUBGCP6
Ensembl Gene ID:
ENSAPLG00000003180
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003259
20381526 - 20403454
21929