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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_20384734_20385001_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20384734 - 20385001
Intron Length:
268

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTATTTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTACGAT
U12 Branch Point Sequence:
ACTCGGTTATTT
Flanking Amino Acid:
ALSCLELRYKVDWPLNIVIT
Intron Amino Acid Position:
1534

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
62
0.3
1.4
60.8
45.4
Major PPT
86.3
0.82
0.7
85.7
28.7
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
41
-0.6
2.4
59.07
44.7

Associated Gene:

Gene:
TUBGCP6
Ensembl Gene ID:
ENSAPLG00000003180
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003259
20381526 - 20403454
21929