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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_20385197_20386209_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20385197 - 20386209
Intron Length:
1013

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTGCT
5'SS Class:
major
3'SS Sequence:
CTTCTTCCCATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
CACTGTATAATT
Flanking Amino Acid:
QSLSDLLFEKLGSGQTPGEL
Intron Amino Acid Position:
1469

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
73.4
35.4
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
77.3
0.61
0.7
72.8
25.6
Minor 5ss
41.5
-0.9
3.1
59.5
45
Minor BPS
46.3
-0.2
2
61.11
43.5

Associated Gene:

Gene:
TUBGCP6
Ensembl Gene ID:
ENSAPLG00000003180
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003259
20381526 - 20403454
21929