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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_20386352_20387294_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20386352 - 20387294
Intron Length:
943

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTGAGTACC
5'SS Class:
major
3'SS Sequence:
TTTTCATTCTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TGTGTTTTCATT
Flanking Amino Acid:
KRSITAPLVSHVSLVNKAIV
Intron Amino Acid Position:
1421

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1
69
35.7
Major BPS
100
1.24
0.5
100
0
Major PPT
82.5
0.73
0.7
81.9
28.8
Minor 5ss
33.7
-1.9
2.7
43.9
37
Minor BPS
50.7
0.1
1.8
71.21
40.9

Associated Gene:

Gene:
TUBGCP6
Ensembl Gene ID:
ENSAPLG00000003180
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003259
20381526 - 20403454
21929