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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_20387464_20387733_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20387464 - 20387733
Intron Length:
270

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTGAGTAGA
5'SS Class:
major
3'SS Sequence:
TTTTTAAATTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATGTTTTTAAAT
Flanking Amino Acid:
EKYQDSYDLMSELPVSHLLH
Intron Amino Acid Position:
1365

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.4
0.48
1.1
67
40
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
77.3
0.61
0.9
76.3
37
Minor 5ss
31.6
-2.1
2.7
34.1
41.4
Minor BPS
68.3
0.65
1.3
78.91
37.3

Associated Gene:

Gene:
TUBGCP6
Ensembl Gene ID:
ENSAPLG00000003180
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003259
20381526 - 20403454
21929