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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_20390317_20390407_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20390317 - 20390407
Intron Length:
91

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTTTCT
5'SS Class:
major
3'SS Sequence:
TTTTTACTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTACTTACAG
Flanking Amino Acid:
FLLEDQKRIEEMLEKLPDGN
Intron Amino Acid Position:
807

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
76
33.7
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
90.6
0.91
0.7
85.1
28.5
Minor 5ss
49
-0.1
2.4
68.6
42
Minor BPS
57
0.08
2
69.83
43

Associated Gene:

Gene:
TUBGCP6
Ensembl Gene ID:
ENSAPLG00000003180
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003259
20381526 - 20403454
21929