About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_20393323_20393422_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20393323 - 20393422
Intron Length:
100

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGGTAT
5'SS Class:
strong_major
3'SS Sequence:
TATTTATATGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
CAATTATTAAAT
Flanking Amino Acid:
QVNEDYLCFRDKHYWTHGYV
Intron Amino Acid Position:
568

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
77.4
33.4
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
79.8
0.67
0.9
74.8
38.9
Minor 5ss
44.5
-0.6
3.2
63.6
48.1
Minor BPS
53.7
0.19
1.7
68.42
41.7

Associated Gene:

Gene:
TUBGCP6
Ensembl Gene ID:
ENSAPLG00000003180
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003259
20381526 - 20403454
21929