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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_20393515_20395742_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20393515 - 20395742
Intron Length:
2228

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCGTCCA
5'SS Class:
strong_major
3'SS Sequence:
ATATTTCTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TATTGTTTAATT
Flanking Amino Acid:
LLKTSCEPYTRFIYDWVYSG
Intron Amino Acid Position:
537

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
67.8
39.1
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
80.3
0.68
0.8
78.5
35.1
Minor 5ss
28
-2.5
2.9
33.4
41.7
Minor BPS
69.7
0.7
1.7
84.68
36.4

Associated Gene:

Gene:
TUBGCP6
Ensembl Gene ID:
ENSAPLG00000003180
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003259
20381526 - 20403454
21929