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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_20395853_20396347_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20395853 - 20396347
Intron Length:
495

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAATCATT
5'SS Class:
major
3'SS Sequence:
TTTCTTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TATCATCTAACA
Flanking Amino Acid:
SGGAGSSFPTGVKLLSYLYK
Intron Amino Acid Position:
501

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1.1
75
41
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
92.2
0.95
0.5
92.5
17.5
Minor 5ss
45.9
-0.4
2.9
67.7
43
Minor BPS
51.9
0.06
1.8
68.24
37.3

Associated Gene:

Gene:
TUBGCP6
Ensembl Gene ID:
ENSAPLG00000003180
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003259
20381526 - 20403454
21929