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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_20396424_20396755_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20396424 - 20396755
Intron Length:
332

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
ATGTTTTTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
AATTTCTTATAT
Flanking Amino Acid:
FLFRKLGRQLRYLAELCGIG
Intron Amino Acid Position:
475

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.4
26.8
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
81.6
0.71
0.8
77
36.7
Minor 5ss
29.7
-2.3
3.3
37.8
47
Minor BPS
60.9
0.42
1.7
76.75
39.3

Associated Gene:

Gene:
TUBGCP6
Ensembl Gene ID:
ENSAPLG00000003180
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003259
20381526 - 20403454
21929