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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_20398138_20398655_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20398138 - 20398655
Intron Length:
518

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGAAG
5'SS Class:
strong_major
3'SS Sequence:
CGTTTCCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTTATT
Flanking Amino Acid:
VVSATFSLNQAAQTFVIKEG
Intron Amino Acid Position:
377

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
71.3
40.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
80.1
0.68
0.8
77.7
31.1
Minor 5ss
37.7
-1.4
3.1
47.3
48.3
Minor BPS
69.2
0.69
1.5
86.8
32.8

Associated Gene:

Gene:
TUBGCP6
Ensembl Gene ID:
ENSAPLG00000003180
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003259
20381526 - 20403454
21929