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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_20400394_20401751_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20400394 - 20401751
Intron Length:
1358

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATGGGAT
5'SS Class:
major
3'SS Sequence:
CTCTCTCTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
AAAGCTTGAACT
Flanking Amino Acid:
NADLSGLAIKVPQSIDQSED
Intron Amino Acid Position:
252

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.53
1
68.5
36.3
Major BPS
100
1.24
0.5
100
0
Major PPT
75.6
0.58
0.9
72.4
32.2
Minor 5ss
38.7
-1.3
3.6
54.6
44.4
Minor BPS
57
0.3
1.5
69.52
41

Associated Gene:

Gene:
TUBGCP6
Ensembl Gene ID:
ENSAPLG00000003180
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003259
20381526 - 20403454
21929