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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_20409407_20409908_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20409407 - 20409908
Intron Length:
502

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAATTTG
5'SS Class:
strong_major
3'SS Sequence:
TTGTGTTCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATACAT
U12 Branch Point Sequence:
TATACATGATTT
Flanking Amino Acid:
LRYSVHFGFQRVLCVFVGDM
Intron Amino Acid Position:
514

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
77.2
33.9
Major BPS
74.9
0.62
1
81.3
29.9
Major PPT
82.5
0.73
0.9
76.6
37.7
Minor 5ss
37.7
-1.4
3
48.7
47.5
Minor BPS
47
-0.1
1.9
68.57
41.8

Associated Gene:

Gene:
HDAC10
Ensembl Gene ID:
ENSAPLG00000003588
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003723
20404310 - 20422307
17998