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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_20412531_20413029_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20412531 - 20413029
Intron Length:
499

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCCTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTGAAAC
U12 Branch Point Sequence:
TTTTTTTTCCCT
Flanking Amino Acid:
KPYWKWLMYEDTSFLHNLST
Intron Amino Acid Position:
365

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
85.1
25.8
Major BPS
45.9
-0.2
1.3
50.7
41.6
Major PPT
85.6
0.8
0.6
78.7
30.2
Minor 5ss
35.1
-1.7
2.7
42.4
44.3
Minor BPS
45.4
-0.2
3.6
82.56
39.6

Associated Gene:

Gene:
HDAC10
Ensembl Gene ID:
ENSAPLG00000003588
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003723
20404310 - 20422307
17998