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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_20414332_20415518_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20414332 - 20415518
Intron Length:
1187

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGACT
5'SS Class:
strong_major
3'SS Sequence:
ACTTCTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACATAAT
U12 Branch Point Sequence:
TGTTCCTTACGT
Flanking Amino Acid:
ANGKLCVILEGGYHLKSLSE
Intron Amino Acid Position:
307

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
78.5
35.4
Major BPS
66.4
0.41
1.1
66.3
36.5
Major PPT
81
0.7
0.8
73.5
36.4
Minor 5ss
34.3
-1.8
3.3
49.5
46.5
Minor BPS
66
0.58
1.9
84.57
42.1

Associated Gene:

Gene:
HDAC10
Ensembl Gene ID:
ENSAPLG00000003588
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003723
20404310 - 20422307
17998