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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_20415609_20415983_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20415609 - 20415983
Intron Length:
375

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTGATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TTTTCTTTGATT
Flanking Amino Acid:
GYDSGIGDPEGQMNATPEVF
Intron Amino Acid Position:
277

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
84.2
26.3
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
77.7
0.62
0.9
77.6
35.8
Minor 5ss
37.7
-1.4
2.7
46.1
36.1
Minor BPS
83.7
1.14
0.9
94.68
25

Associated Gene:

Gene:
HDAC10
Ensembl Gene ID:
ENSAPLG00000003588
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003723
20404310 - 20422307
17998